Search results

Advice to increase the accuracy asked for mapping

Status: Open.

#1336 In lh3/minimap2;

· wdesaintjean opened on Nov 13, 2025

some contigs have all MAPQ <5, some 60

Status: Open.

#1327 In lh3/minimap2;

· dcopetti opened on Oct 16, 2025

Option to add header lines from string/file

Status: Open.

#1325 In lh3/minimap2;

· Stikus opened on Oct 7, 2025

Phishing site : minimap2.com

help wanted

Status: Open.

#1316 In lh3/minimap2;

· SRooke opened on Sep 9, 2025

A corrupt FASTQ that causes minimap2 to create bogus SAM

Status: Open.

#1315 In lh3/minimap2;

· diekhans opened on Sep 6, 2025

not properly aligned pair-end reads because of trimming

Status: Open.

#1307 In lh3/minimap2;

· korneel-emweb opened on Jul 1, 2025

paftools.js prints errors to stdout rather than stderr

Status: Open.

#1305 In lh3/minimap2;

· diekhans opened on Jun 20, 2025

Minimap2 crashes for Wheat Scaffolding

Status: Open.

#1303 In lh3/minimap2;

· neupanebpn63 opened on Jun 9, 2025

Enhancements for paired-end short-read RNAseq alignment

feature-request

Status: Open.

#1297 In lh3/minimap2;

· JosephLalli opened on May 5, 2025

Query about Micro-C data usage

Status: Open.

#1295 In lh3/minimap2;

· NMaziak opened on Apr 23, 2025

1.9 TB is insufficient memory for whole genome alignment between two 5 GB genomes.

Status: Open.

#1272 In lh3/minimap2;

· altuffin opened on Jan 22, 2025

split reference genome alignment would be in consistence with aligning it as a whole?

split-prefix

Status: Open.

#1270 In lh3/minimap2;

· Alipha-Clisa opened on Jan 13, 2025