Remember last sim

WorkbenchProject/LastSimulation/model.ttl

@@ -0,0 +1,108 @@
+@prefix rdf:   <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
+@prefix xsd:   <http://www.w3.org/2000/10/XMLSchema#> .
+@prefix rdfs:  <http://www.w3.org/2000/01/rdf-schema#> .
+@prefix remote: <otachi.uwb.edu#> .
+@prefix prov:  <http://www.w3.org/ns/prov#> .
+@prefix local: <DESKTOP-3N8B16A@205.175.118.10#> .
+
+<local:~/WorkbenchSimulations/trial404/configfilestrial404.xml>
+        a                    prov:Entity ;
+        rdfs:label           "simulationConfigurationFile" ;
+        prov:wasDerivedFrom  <local:C:/Users/Administrator/WorkbenchProjects/Default/trial404/configfiles/trial404.xml> ;
+        prov:wasGeneratedBy  <local:upload_SimConfig> .
+
+<local:~/WorkbenchSimulations/trial404/configfiles/NListActiveNList.xml>
+        a                    prov:Entity ;
+        rdfs:label           "nlist" ;
+        prov:wasDerivedFrom  <local:C:/Users/Administrator/WorkbenchProjects/Default/trial404/configfiles/NList/ActiveNList.xml> ;
+        prov:wasGeneratedBy  <local:upload_ACTIVE_NList> .
+
+<local:upload_SimConfig>
+        a                       prov:Activity ;
+        rdfs:label              "upload" ;
+        prov:endedAtTime        "2023-03-01T00:04:26.626Z"^^<http://www.w3.org/2001/XMLSchema#dateTime> ;
+        prov:generated          <local:~/WorkbenchSimulations/trial404/configfilestrial404.xml> ;
+        prov:startedAtTime      "2023-03-01T00:04:26.298Z"^^<http://www.w3.org/2001/XMLSchema#dateTime> ;
+        prov:used               <local:C:/Users/Administrator/WorkbenchProjects/Default/trial404/configfiles/trial404.xml> ;
+        prov:wasAssociatedWith  <local:workbench> .
+
+<local:C:/Users/Administrator/WorkbenchProjects/Default/trial404/configfiles/NList/ActiveNList.xml>
+        a           prov:Entity ;
+        rdfs:label  "nlist" .
+
+<local:~/WorkbenchSimulations/trial404/configfiles/NListprobedNList.xml>
+        a                    prov:Entity ;
+        rdfs:label           "nlist" ;
+        prov:wasDerivedFrom  <local:C:/Users/Administrator/WorkbenchProjects/Default/trial404/configfiles/NList/probedNList.xml> ;
+        prov:wasGeneratedBy  <local:upload_PROBED_NList> .
+
+<local:C:/Users/Administrator/WorkbenchProjects/Default/trial404/configfiles/NList/probedNList.xml>
+        a           prov:Entity ;
+        rdfs:label  "nlist" .
+
+<local:uploadScript>  a         prov:Activity ;
+        rdfs:label              "upload" ;
+        prov:endedAtTime        "2023-03-01T00:04:25.333Z"^^<http://www.w3.org/2001/XMLSchema#dateTime> ;
+        prov:generated          <local:~/WorkbenchSimulations/trial404/trial404_script.sh> ;
+        prov:startedAtTime      "2023-03-01T00:04:25.026Z"^^<http://www.w3.org/2001/XMLSchema#dateTime> ;
+        prov:used               <local:C:/Users/Administrator/WorkbenchProjects/Default/trial404/script/trial404_script.sh> ;
+        prov:wasAssociatedWith  <local:workbench> .
+
+<local:workbench>  a  prov:SoftwareAgent .
+
+<local:upload_INHIBITORY_NList>
+        a                       prov:Activity ;
+        rdfs:label              "upload" ;
+        prov:endedAtTime        "2023-03-01T00:04:25.99Z"^^<http://www.w3.org/2001/XMLSchema#dateTime> ;
+        prov:generated          <local:~/WorkbenchSimulations/trial404/configfiles/NListInhibitoryNList.xml> ;
+        prov:startedAtTime      "2023-03-01T00:04:25.682Z"^^<http://www.w3.org/2001/XMLSchema#dateTime> ;
+        prov:used               <local:C:/Users/Administrator/WorkbenchProjects/Default/trial404/configfiles/NList/InhibitoryNList.xml> ;
+        prov:wasAssociatedWith  <local:workbench> .
+
+<local:upload_PROBED_NList>
+        a                       prov:Activity ;
+        rdfs:label              "upload" ;
+        prov:endedAtTime        "2023-03-01T00:04:26.298Z"^^<http://www.w3.org/2001/XMLSchema#dateTime> ;
+        prov:generated          <local:~/WorkbenchSimulations/trial404/configfiles/NListprobedNList.xml> ;
+        prov:startedAtTime      "2023-03-01T00:04:25.991Z"^^<http://www.w3.org/2001/XMLSchema#dateTime> ;
+        prov:used               <local:C:/Users/Administrator/WorkbenchProjects/Default/trial404/configfiles/NList/probedNList.xml> ;
+        prov:wasAssociatedWith  <local:workbench> .
+
+<local:C:/Users/Administrator/WorkbenchProjects/Default/trial404/configfiles/NList/InhibitoryNList.xml>
+        a           prov:Entity ;
+        rdfs:label  "nlist" .
+
+<local:upload_ACTIVE_NList>
+        a                       prov:Activity ;
+        rdfs:label              "upload" ;
+        prov:endedAtTime        "2023-03-01T00:04:25.682Z"^^<http://www.w3.org/2001/XMLSchema#dateTime> ;
+        prov:generated          <local:~/WorkbenchSimulations/trial404/configfiles/NListActiveNList.xml> ;
+        prov:startedAtTime      "2023-03-01T00:04:25.333Z"^^<http://www.w3.org/2001/XMLSchema#dateTime> ;
+        prov:used               <local:C:/Users/Administrator/WorkbenchProjects/Default/trial404/configfiles/NList/ActiveNList.xml> ;
+        prov:wasAssociatedWith  <local:workbench> .
+
+<local:simulation_input_file_generation>
+        a                       prov:Activity ;
+        prov:generated          <local:C:/Users/Administrator/WorkbenchProjects/Default/trial404/configfiles/trial404.xml> ;
+        prov:wasAssociatedWith  <local:workbench> .
+
+<local:C:/Users/Administrator/WorkbenchProjects/Default/trial404/configfiles/trial404.xml>
+        a                    prov:Entity ;
+        rdfs:label           "simulationConfigurationFile" ;
+        prov:wasGeneratedBy  <local:simulation_input_file_generation> .
+
+<local:~/WorkbenchSimulations/trial404/configfiles/NListInhibitoryNList.xml>
+        a                    prov:Entity ;
+        rdfs:label           "nlist" ;
+        prov:wasDerivedFrom  <local:C:/Users/Administrator/WorkbenchProjects/Default/trial404/configfiles/NList/InhibitoryNList.xml> ;
+        prov:wasGeneratedBy  <local:upload_INHIBITORY_NList> .
+
+<local:C:/Users/Administrator/WorkbenchProjects/Default/trial404/script/trial404_script.sh>
+        a           prov:Entity ;
+        rdfs:label  "script" .
+
+<local:~/WorkbenchSimulations/trial404/trial404_script.sh>
+        a                    prov:Entity ;
+        rdfs:label           "script" ;
+        prov:wasDerivedFrom  <local:C:/Users/Administrator/WorkbenchProjects/Default/trial404/script/trial404_script.sh> ;
+        prov:wasGeneratedBy  <local:uploadScript> .

WorkbenchProject/LastSimulation/uri

@@ -0,0 +1,3 @@
+C:\Users\Administrator\WorkbenchProjects\Default\trial404\provenance\trial404.ttl
+DESKTOP-3N8B16A@205.175.118.10#
+null

WorkbenchProject/src/main/java/edu/uwb/braingrid/provenance/ProvMgr.java

@@ -6,6 +6,7 @@
 import java.io.InputStream;
 import java.io.InputStreamReader;
 import java.io.PrintStream;
+import java.io.Serializable;
 import java.net.InetAddress;
 import java.net.URL;
 import java.net.URLConnection;
@@ -50,7 +51,7 @@
  * @author Del Davis, Extended by Joseph Conquest
  * @version 1.2
  */
-public class ProvMgr {
+public class ProvMgr implements Serializable {
 
     // <editor-fold defaultstate="collapsed" desc="Members">
     private static final Logger LOG = Logger.getLogger(ProvMgr.class.getName());
@@ -63,14 +64,60 @@ public class ProvMgr {
     public static final String LOCAL_NS_PREFIX = "local";
 
     /* URIs used to describe the provenance */
-    private String provOutputFileURI;
-    private String localNameSpaceURI;
-    private String remoteNameSpaceURI;
+  private String provOutputFileUri;
+  private String localNameSpaceUri;
+  private String remoteNameSpaceUri;
 
     /* RDF in-memory representation of the provenance */
     private Model model;
     // </editor-fold>
 
+  /**
+   * The getter for provURI.
+   *
+   *  @return return the provURI.
+   *
+   */
+  public String getProvUri() {
+    return provOutputFileUri;
+  }
+
+  /**
+   * The getter for LocalURI.
+   *
+   *  @return return the LocalURI.
+   *
+   */
+  public String getLocalUri() {
+    return localNameSpaceUri;
+  }
+
+  /**
+   * The getter for RemoteURI.
+   *
+   *  @return return the RemoteURI.
+   *
+   */
+  public String getRemoteUri() {
+    return remoteNameSpaceUri;
+  }
+
+  /**
+   * The constructor used by resume Lastsimulation.
+   *
+   *  @param provUri the provURI
+   *  @param localUri the localURI
+   *  @param remoteUri the remoteURI
+   *  @param model the model
+   */
+
+  public ProvMgr(String provUri, String localUri, String remoteUri, Model model) {
+    this.provOutputFileUri = provUri;
+    this.localNameSpaceUri = localUri;
+    this.remoteNameSpaceUri = remoteUri;
+    this.model = model;
+  }
+
     // <editor-fold defaultstate="collapsed" desc="Construction">
     /**
      * Constructs the Provenance Constructor object from a previously recorded provenance file.
@@ -97,7 +144,7 @@ public ProvMgr(Simulation simulation, boolean load) throws IOException, RiotNotF
     private void init(Simulation simulation) {
         // create RDF model
         model = ModelFactory.createDefaultModel();
-        provOutputFileURI = simulation.getProvLocation()
+    provOutputFileUri = simulation.getProvLocation()
                 .resolve(simulation.getName() + ".ttl").toString();
         // set prefixes for...
         // RDF syntax
@@ -108,9 +155,9 @@ private void init(Simulation simulation) {
         model.setNsPrefix("prov", ProvOntology.getPROVNameSpaceURI());
         // XML schema
         model.setNsPrefix("xsd", ProvOntology.getXSDNameSpaceURI());
-        localNameSpaceURI = getLocalNameSpaceURI();
+    localNameSpaceUri = getLocalNameSpaceURI();
         // Graphitti Prov
-        model.setNsPrefix(LOCAL_NS_PREFIX, localNameSpaceURI);
+    model.setNsPrefix(LOCAL_NS_PREFIX, localNameSpaceUri);
     }
 
     /**
@@ -120,11 +167,11 @@ private void init(Simulation simulation) {
      */
     private void load(Simulation simulation) throws RiotNotFoundException {
         String name = simulation.getName();
-        provOutputFileURI = simulation.getProvLocation().resolve(name + ".ttl").toString();
-        model = RDFDataMgr.loadModel(provOutputFileURI);
-        localNameSpaceURI = getLocalNameSpaceURI();
-        model.setNsPrefix(LOCAL_NS_PREFIX, localNameSpaceURI);
-        trimRemoteNS();
+    provOutputFileUri = simulation.getProvLocation().resolve(name + ".ttl").toString();
+    model = RDFDataMgr.loadModel(provOutputFileUri);
+    localNameSpaceUri = getLocalNameSpaceURI();
+    model.setNsPrefix(LOCAL_NS_PREFIX, localNameSpaceUri);
+    trimRemoteNS();
     }
 
     /**
@@ -137,8 +184,8 @@ private void trimRemoteNS() {
             String nameSpace = entry.getKey();
             String uri = entry.getValue();
             if (nameSpace.startsWith(REMOTE_NS_PREFIX)) {
-                remoteNameSpaceURI = uri.substring(uri.lastIndexOf('/') + 1);
-                model.setNsPrefix(nameSpace, remoteNameSpaceURI);
+        remoteNameSpaceUri = uri.substring(uri.lastIndexOf('/') + 1);
+        model.setNsPrefix(nameSpace, remoteNameSpaceUri);
             }
         }
     }
@@ -166,9 +213,9 @@ public void setNsPrefix(String prefix, String uri) {
      *
      * @return The URI of the provenance output file
      */
-    public String getProvFileURI() {
-        return provOutputFileURI;
-    }
+  public String getProvFileUri() {
+    return provOutputFileUri;
+  }
 
     /**
      * Gets the RDF model maintained by the manager.

WorkbenchProject/src/main/java/edu/uwb/braingrid/workbench/FileManager.java

@@ -175,14 +175,23 @@ public static Path getCurrentProjectDirectory() {
         return getProjectsDirectory().resolve(WorkbenchManager.getInstance().getProjectName());
     }
 
+  private static String workingDir() {
+    String dir = System.getProperty("user.dir");
+    String target = "\\target";
+    if (dir.endsWith(target)) {
+      dir = dir.substring(0, dir.length() - target.length());
+    }
+    return dir;
+  }
+
     /**
      * Provides the working directory of the current user.
      *
      * @return The working directory of the current user
      */
-    public static Path getUserDir() {
-        return Paths.get(System.getProperty("user.dir"));
-    }
+  public static Path getUserDir() {
+    return Paths.get(workingDir());
+  }
 
     /**
      * Provides the home directory of the current user.